Variant report

Variant	rs7949025
Chromosome Location	chr11:47029299-47029300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47019891..47022627-chr11:47029015..47030790,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11039051	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039087	1.00[AMR][1000 genomes]
rs11500471	0.86[AFR][1000 genomes]
rs12272266	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12288724	0.93[ASW][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs12293894	1.00[AMR][1000 genomes]
rs4084459	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55924076	0.85[AFR][1000 genomes]
rs60793721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61516301	0.81[AFR][1000 genomes]
rs6485729	1.00[ASW][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap]
rs6485743	1.00[ASW][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs7103266	0.87[AFR][1000 genomes]
rs7106654	0.96[YRI][hapmap]
rs7125863	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128520	1.00[YRI][hapmap]
rs73462094	0.89[AMR][1000 genomes]
rs73462095	1.00[AMR][1000 genomes]
rs7930293	0.80[AFR][1000 genomes]
rs7930424	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47003400-47032800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:47023600-47030200	Enhancers	Colon Smooth Muscle	Colon
3	chr11:47026000-47029400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:47026000-47035600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:47026600-47030600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:47026600-47036800	Weak transcription	Primary B cells from cord blood	blood
7	chr11:47026600-47042200	Weak transcription	Small Intestine	intestine
8	chr11:47026800-47041000	Weak transcription	Hela-S3	cervix
9	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:47027000-47040000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:47027200-47031200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:47027200-47031800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:47027200-47034600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:47027200-47042000	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:47027400-47039600	Weak transcription	Osteobl	bone
16	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:47027800-47048000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:47028200-47031600	Weak transcription	Fetal Lung	lung
19	chr11:47028600-47029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:47028800-47029600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:47029200-47029600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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