Variant report

Variant	rs7950001
Chromosome Location	chr11:76734957-76734958
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76728251..76730918-chr11:76733104..76735734,2	K562	blood:
2	chr11:76734288..76736096-chr11:76745651..76747532,2	MCF-7	breast:
3	chr11:76726745..76728843-chr11:76732753..76735602,2	K562	blood:
4	chr11:76730817..76732917-chr11:76734478..76737111,3	MCF-7	breast:
5	chr11:76731422..76735171-chr11:76748297..76752199,4	MCF-7	breast:
6	chr11:76729418..76731930-chr11:76733104..76735271,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000198488	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10736811	0.85[ASN][1000 genomes]
rs10736812	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751263	0.82[ASN][1000 genomes]
rs10751270	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751271	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793223	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793224	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793225	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793226	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793227	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793228	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793229	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793230	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793231	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793232	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899303	0.82[ASN][1000 genomes]
rs10899333	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899340	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899341	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899343	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899344	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237036	0.83[EUR][1000 genomes]
rs11237052	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12223659	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12279946	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12286501	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12286600	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1517907	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1517908	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1517909	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1517910	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1589126	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1607287	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1850544	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1878630	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1945083	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1945086	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1969315	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1973714	0.82[ASN][1000 genomes]
rs2090524	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2119458	0.82[ASN][1000 genomes]
rs2156770	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2826	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3740764	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740765	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740767	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781697	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824889	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3851191	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3914687	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4145048	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4460836	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4944131	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4944132	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4944134	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4945127	0.85[EUR][1000 genomes]
rs4945129	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4945131	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4945132	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945133	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs591043	0.90[ASN][1000 genomes]
rs6592678	0.83[ASN][1000 genomes]
rs6592683	0.85[ASN][1000 genomes]
rs6592689	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592690	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592691	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592692	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592693	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6592694	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7103500	0.82[ASN][1000 genomes]
rs7105694	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7107505	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7110305	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7110532	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7113647	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7113778	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7119492	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7121273	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7121920	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7123496	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7123694	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7123723	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7127936	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7128038	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7129388	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7925652	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7925774	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7926122	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7926409	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7927367	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7927731	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7931646	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7931869	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7940782	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7940972	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943913	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs949339	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs949340	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
3	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:76690200-76736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
6	chr11:76696200-76738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:76701200-76738400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:76702600-76736000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:76705600-76735600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:76716400-76739800	Weak transcription	Colonic Mucosa	Colon
11	chr11:76720000-76738000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:76720400-76735600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:76720400-76738000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:76720800-76736400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:76720800-76737200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:76722600-76736600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:76722600-76736600	Weak transcription	Spleen	Spleen
18	chr11:76722600-76740400	Weak transcription	Lung	lung
19	chr11:76722600-76741800	Weak transcription	Aorta	Aorta
20	chr11:76722600-76741800	Weak transcription	Gastric	stomach
21	chr11:76724000-76735000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:76726800-76735200	Weak transcription	NHDF-Ad	bronchial
23	chr11:76727200-76735400	Weak transcription	Fetal Intestine Small	intestine
24	chr11:76727200-76736600	Weak transcription	Fetal Intestine Large	intestine
25	chr11:76727200-76740400	Weak transcription	Esophagus	oesophagus
26	chr11:76728600-76735600	Weak transcription	GM12878-XiMat	blood
27	chr11:76730200-76738400	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:76730200-76738600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:76731400-76735400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr11:76731600-76737200	Weak transcription	HSMM	muscle
31	chr11:76731800-76737200	Weak transcription	HepG2	liver
32	chr11:76731800-76738400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:76732200-76735400	Weak transcription	K562	blood
34	chr11:76732200-76738000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:76732200-76738600	Weak transcription	NHEK	skin
36	chr11:76732200-76741400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:76732200-76746600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:76732400-76735600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:76732400-76736200	Weak transcription	HUVEC	blood vessel
40	chr11:76732400-76736800	Weak transcription	Placenta	Placenta
41	chr11:76732400-76737600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:76732400-76740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:76732600-76738400	Weak transcription	HMEC	breast
44	chr11:76733000-76736600	Weak transcription	A549	lung
45	chr11:76733000-76737800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:76733000-76746200	Weak transcription	Hela-S3	cervix
47	chr11:76733200-76736600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:76733200-76736800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:76733200-76739200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr11:76733400-76738400	Weak transcription	Fetal Lung	lung

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