Variant report

Variant	rs7950036
Chromosome Location	chr11:93212775-93212776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93208394..93211665-chr11:93212462..93214583,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10466331	0.81[CEU][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10466332	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10466333	0.87[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11020370	0.97[EUR][1000 genomes]
rs11020392	0.91[GIH][hapmap]
rs13343173	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2658798	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs56240121	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58336329	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6483245	0.96[EUR][1000 genomes]
rs7106781	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7127294	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7950036	FAT3	cis	parietal	SCAN
rs7950036	C11orf54	cis	parietal	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93200600-93214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:93207800-93220000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:93208200-93223200	Weak transcription	GM12878-XiMat	blood
5	chr11:93208400-93218400	Weak transcription	Left Ventricle	heart
6	chr11:93208600-93217800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:93208800-93213000	Strong transcription	Liver	Liver
8	chr11:93209000-93214200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:93209000-93231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:93209000-93235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:93209200-93213200	Weak transcription	Small Intestine	intestine
12	chr11:93209200-93215000	Weak transcription	Right Ventricle	heart
13	chr11:93209200-93229200	Weak transcription	Dnd41	blood
14	chr11:93209400-93214200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:93209400-93215000	Weak transcription	Right Atrium	heart
16	chr11:93209400-93218800	Strong transcription	Fetal Intestine Small	intestine
17	chr11:93209600-93213000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:93209600-93214800	Strong transcription	Aorta	Aorta
19	chr11:93209600-93229400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:93209800-93213000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:93209800-93217200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:93210000-93215800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr11:93210400-93213000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr11:93210400-93213800	Weak transcription	Stomach Mucosa	stomach
25	chr11:93210600-93213000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr11:93210600-93213200	Strong transcription	Lung	lung
27	chr11:93210600-93214400	Weak transcription	Esophagus	oesophagus
28	chr11:93210600-93214800	Strong transcription	Spleen	Spleen
29	chr11:93210600-93215400	Weak transcription	Fetal Lung	lung
30	chr11:93210600-93220000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:93210600-93231600	Weak transcription	A549	lung
32	chr11:93210800-93213400	Strong transcription	Pancreas	Pancrea
33	chr11:93211000-93214200	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:93211000-93214200	Weak transcription	Hela-S3	cervix
35	chr11:93211000-93218600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:93211000-93225800	Weak transcription	Thymus	Thymus
37	chr11:93211000-93253400	Weak transcription	Primary T cells from cord blood	blood
38	chr11:93211200-93215600	Weak transcription	Fetal Brain Female	brain
39	chr11:93211200-93222000	Weak transcription	Adipose Nuclei	Adipose
40	chr11:93211400-93213000	Strong transcription	Fetal Intestine Large	intestine
41	chr11:93211600-93212800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:93211600-93213000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr11:93211600-93215000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:93211600-93215000	Strong transcription	Fetal Stomach	stomach
45	chr11:93211600-93216600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:93211600-93219000	Weak transcription	HepG2	liver
47	chr11:93211600-93220400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:93211600-93223000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:93211600-93243800	Weak transcription	Fetal Thymus	thymus
50	chr11:93211800-93213600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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