Variant report

Variant	rs7950660
Chromosome Location	chr11:18788756-18788757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55936000	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58946138	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59438937	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7936774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv525192	chr11:18722791-18793360	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv525452	chr11:18735947-18802503	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18774000-18790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:18774600-18790400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:18774800-18790400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:18780800-18790600	Weak transcription	Left Ventricle	heart
5	chr11:18783000-18801800	Weak transcription	Spleen	Spleen
6	chr11:18783800-18791200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:18784000-18808000	Weak transcription	Fetal Brain Female	brain
8	chr11:18785000-18791800	Weak transcription	Brain Germinal Matrix	brain
9	chr11:18785600-18793400	Weak transcription	Fetal Brain Male	brain
10	chr11:18785800-18790200	Weak transcription	HSMMtube	muscle
11	chr11:18786000-18790000	Weak transcription	Brain Anterior Caudate	brain
12	chr11:18786000-18790800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:18786200-18788800	Weak transcription	GM12878-XiMat	blood
14	chr11:18787000-18788800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:18787000-18789000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:18788000-18789000	Enhancers	NHDF-Ad	bronchial
17	chr11:18788600-18789800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:18788600-18792200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links