Variant report

Variant	rs7952204
Chromosome Location	chr11:47711021-47711022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47702117..47703985-chr11:47709278..47711323,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10742816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs11039387	0.88[ASN][1000 genomes]
rs11819955	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs11819979	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11820480	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1474056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16938631	0.82[YRI][hapmap]
rs17791016	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1872167	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2138767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2305982	0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2305983	0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2869531	0.95[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2869532	1.00[ASN][1000 genomes]
rs4147730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[EUR][1000 genomes]
rs4303192	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4752783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752791	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4752848	0.80[EUR][1000 genomes]
rs4752871	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752872	0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs4752877	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752879	0.87[ASN][1000 genomes]
rs57436966	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57828885	0.80[EUR][1000 genomes]
rs58357937	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59205786	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60515486	0.93[ASN][1000 genomes]
rs6485772	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6485774	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs6485783	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485784	0.88[ASN][1000 genomes]
rs6485788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7116299	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7120737	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121264	0.98[ASN][1000 genomes]
rs7124949	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7924699	0.88[ASN][1000 genomes]
rs7927611	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7931089	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7939069	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7942031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7945911	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9666924	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47689400-47711200	Weak transcription	Liver	Liver
2	chr11:47704400-47711200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:47704400-47712000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:47705600-47735600	Weak transcription	Primary B cells from cord blood	blood
5	chr11:47708000-47712200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:47709000-47712000	Enhancers	Fetal Intestine Small	intestine
7	chr11:47709600-47712200	Enhancers	Fetal Intestine Large	intestine
8	chr11:47709800-47711800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr11:47710000-47711200	Enhancers	Colonic Mucosa	Colon
10	chr11:47710400-47711400	Weak transcription	Rectal Mucosa Donor 29	rectum

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