Variant report

Variant	rs7953491
Chromosome Location	chr12:86665147-86665148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86661669..86664440-chr12:86664812..86667661,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11829372	0.89[AFR][1000 genomes]
rs11829513	0.90[AFR][1000 genomes]
rs11830448	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12302310	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12302551	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12319410	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12319593	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12581912	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1389291	0.90[AFR][1000 genomes]
rs17013842	0.93[AFR][1000 genomes]
rs17013858	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17013981	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1986602	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1986603	0.90[ASN][1000 genomes]
rs2405929	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2897274	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4636736	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55979919	0.90[AFR][1000 genomes]
rs56170210	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57977247	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58054764	1.00[EUR][1000 genomes]
rs59690693	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60902071	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61359740	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61571841	1.00[EUR][1000 genomes]
rs61950714	0.84[ASN][1000 genomes]
rs7138352	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7138786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73379423	1.00[EUR][1000 genomes]
rs73385292	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73385293	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73387865	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1053087	chr12:86569126-86733418	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv541564	chr12:86569126-86733418	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1045386	chr12:86616015-86733418	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv541565	chr12:86616015-86733418	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86659000-86667800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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