Variant report

Variant	rs7955870
Chromosome Location	chr12:84901861-84901862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10862876	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10862877	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11116361	0.82[ASN][1000 genomes]
rs11116366	0.82[ASN][1000 genomes]
rs11116367	0.82[ASN][1000 genomes]
rs11116413	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11116428	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11116429	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11116431	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11116434	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11116435	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11116436	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11116487	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1380406	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1380407	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4469935	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7954812	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7957168	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7970336	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7970452	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7972407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899363	chr12:84450824-84940345	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv899365	chr12:84511125-84940345	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899369	chr12:84536107-85067814	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1035863	chr12:84710250-85331290	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035236	chr12:84790507-85350433	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv430521	chr12:84886467-84926332	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv899373	chr12:84891803-84999922	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84897200-84902200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:84899200-84902000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:84899400-84903200	Enhancers	Fetal Stomach	stomach
4	chr12:84899800-84902400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:84899800-84903400	Enhancers	Adipose Nuclei	Adipose
6	chr12:84901000-84903000	Enhancers	Fetal Muscle Leg	muscle
7	chr12:84901200-84902000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr12:84901200-84903200	Enhancers	Colon Smooth Muscle	Colon
9	chr12:84901400-84902000	Enhancers	Stomach Smooth Muscle	stomach
10	chr12:84901400-84902600	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr12:84901400-84903800	Enhancers	HMEC	breast
12	chr12:84901600-84902000	Enhancers	Right Atrium	heart
13	chr12:84901600-84902200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr12:84901600-84902200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr12:84901600-84902400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr12:84901600-84902800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr12:84901600-84903400	Flanking Active TSS	NHDF-Ad	bronchial
18	chr12:84901600-84903800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:84901800-84902200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:84901800-84902200	Enhancers	Hela-S3	cervix
21	chr12:84901800-84902600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:84901800-84902800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:84901800-84903200	Enhancers	Esophagus	oesophagus
24	chr12:84901800-84903400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr12:84901800-84903800	Enhancers	NHEK	skin

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