Variant report

Variant	rs7956219
Chromosome Location	chr12:67971698-67971699
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17104136	1.00[AMR][1000 genomes]
rs1731770	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2700056	1.00[AMR][1000 genomes]
rs2700061	1.00[AMR][1000 genomes]
rs2700063	1.00[AMR][1000 genomes]
rs35314758	1.00[AMR][1000 genomes]
rs6581762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298233	1.00[AMR][1000 genomes]
rs9652023	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430007	chr12:67947726-68241938	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67967800-67973000	Weak transcription	HSMMtube	muscle
2	chr12:67970200-67972400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr12:67970800-67972600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr12:67971000-67972600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr12:67971000-67972600	Weak transcription	Thymus	Thymus
6	chr12:67971200-67972600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:67971200-67976000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr12:67971400-67972400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:67971400-67972600	Enhancers	Primary T cells from cord blood	blood
10	chr12:67971400-67972600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr12:67971400-67972600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr12:67971400-67972800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:67971400-67973000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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