Variant report

Variant	rs7956688
Chromosome Location	chr12:68555327-68555328
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr12:68555172-68555546	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:68555016..68557743-chr12:68559742..68562281,2	K562	blood:

Variant related genes	Relation type
IFNG	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11177061	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11177062	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11177066	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11177067	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11177070	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11177074	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11514279	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11831576	0.90[ASN][1000 genomes]
rs11835593	0.81[ASN][1000 genomes]
rs12306852	0.90[ASN][1000 genomes]
rs12308338	0.90[ASN][1000 genomes]
rs12310687	0.90[ASN][1000 genomes]
rs12318069	0.90[ASN][1000 genomes]
rs12369308	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12370401	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12370402	0.88[EUR][1000 genomes]
rs17104851	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2069728	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2193035	0.81[ASN][1000 genomes]
rs3181032	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3181035	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57680423	0.90[ASN][1000 genomes]
rs60017528	0.90[ASN][1000 genomes]
rs60079212	0.90[ASN][1000 genomes]
rs6581791	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7296336	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7296352	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7301168	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7315177	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74099921	0.80[EUR][1000 genomes]
rs74099930	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7959900	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847952	chr12:68544896-68693242	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68551200-68557000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr12:68551600-68556000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:68554000-68556200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:68554000-68557000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr12:68554000-68557200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:68554000-68557600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr12:68554400-68556200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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