Variant report

Variant	rs7957060
Chromosome Location	chr12:50888983-50888984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10735826	0.93[ASN][1000 genomes]
rs10747586	0.81[EUR][1000 genomes]
rs10783367	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10783368	0.94[ASN][1000 genomes]
rs10876041	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10876044	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10876046	0.85[EUR][1000 genomes]
rs10876048	0.88[ASN][1000 genomes]
rs10876054	0.92[ASN][1000 genomes]
rs10876057	0.88[ASN][1000 genomes]
rs11609231	0.83[EUR][1000 genomes]
rs11611288	0.85[EUR][1000 genomes]
rs11614911	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11832315	0.82[EUR][1000 genomes]
rs12099615	0.88[ASN][1000 genomes]
rs12320201	0.85[ASN][1000 genomes]
rs12817256	0.88[ASN][1000 genomes]
rs12821270	0.86[EUR][1000 genomes]
rs13328926	0.92[ASN][1000 genomes]
rs28414775	0.88[ASN][1000 genomes]
rs28479152	0.94[ASN][1000 genomes]
rs4129355	0.86[ASN][1000 genomes]
rs4306347	0.95[ASN][1000 genomes]
rs4517607	0.93[ASN][1000 genomes]
rs4768848	0.89[ASN][1000 genomes]
rs4768885	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768886	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768887	0.88[ASN][1000 genomes]
rs4768894	0.83[ASN][1000 genomes]
rs55939211	0.83[EUR][1000 genomes]
rs56089074	0.82[EUR][1000 genomes]
rs56104942	0.84[EUR][1000 genomes]
rs56753963	0.85[ASN][1000 genomes]
rs57512759	0.92[ASN][1000 genomes]
rs59194948	0.85[ASN][1000 genomes]
rs59683461	0.88[ASN][1000 genomes]
rs60239257	0.84[ASN][1000 genomes]
rs60494920	0.94[ASN][1000 genomes]
rs66597435	0.82[EUR][1000 genomes]
rs66644594	0.83[EUR][1000 genomes]
rs67701624	0.83[EUR][1000 genomes]
rs68171620	0.82[EUR][1000 genomes]
rs7131795	0.89[EUR][1000 genomes]
rs7131993	0.94[ASN][1000 genomes]
rs7135222	0.88[ASN][1000 genomes]
rs7300979	0.89[EUR][1000 genomes]
rs7301125	0.86[ASN][1000 genomes]
rs7302749	0.94[ASN][1000 genomes]
rs7307815	0.83[EUR][1000 genomes]
rs7487645	0.86[ASN][1000 genomes]
rs7953880	0.92[ASN][1000 genomes]
rs7955310	0.88[ASN][1000 genomes]
rs7978443	0.92[ASN][1000 genomes]
rs7979184	0.91[ASN][1000 genomes]
rs9634264	0.88[ASN][1000 genomes]
rs9738596	0.84[ASN][1000 genomes]
rs9804759	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7957060	CERS5	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50888000-50890400	Weak transcription	Liver	Liver

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