Variant report
| Variant | rs7957071 |
|---|---|
| Chromosome Location | chr12:39310799-39310800 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr12:39310792-39310900 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000252801 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11170425 | 1.00[AMR][1000 genomes] |
| rs11832454 | 1.00[AMR][1000 genomes] |
| rs11833328 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11834267 | 1.00[AMR][1000 genomes] |
| rs11835596 | 1.00[AMR][1000 genomes] |
| rs1878223 | 0.85[AFR][1000 genomes] |
| rs1878224 | 0.88[AFR][1000 genomes] |
| rs57189938 | 1.00[AMR][1000 genomes] |
| rs57380829 | 1.00[AMR][1000 genomes] |
| rs58174482 | 1.00[AMR][1000 genomes] |
| rs58908887 | 1.00[AMR][1000 genomes] |
| rs60605001 | 1.00[AMR][1000 genomes] |
| rs60616247 | 1.00[AMR][1000 genomes] |
| rs7134818 | 1.00[AMR][1000 genomes] |
| rs7134910 | 1.00[AMR][1000 genomes] |
| rs7307683 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7952837 | 1.00[AMR][1000 genomes] |
| rs7968397 | 0.88[AFR][1000 genomes] |
| rs7971601 | 0.88[AFR][1000 genomes] |
| rs7974510 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047623 | chr12:39187817-39539939 | Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | esv3389115 | chr12:39221256-39448458 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv899009 | chr12:39284077-39441096 | Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv2761733 | chr12:39309714-39413045 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:39310000-39313000 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
