Variant report

Variant	rs7957888
Chromosome Location	chr12:10985784-10985785
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1013312	0.94[ASN][1000 genomes]
rs1047699	1.00[ASN][1000 genomes]
rs10734841	1.00[ASN][1000 genomes]
rs10743927	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10743929	0.94[ASN][1000 genomes]
rs10743930	0.94[ASN][1000 genomes]
rs10743931	0.94[ASN][1000 genomes]
rs10743936	0.81[ASN][1000 genomes]
rs10772369	0.97[ASN][1000 genomes]
rs10772371	0.94[ASN][1000 genomes]
rs10845220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845223	0.94[ASN][1000 genomes]
rs10845224	0.94[ASN][1000 genomes]
rs11054053	0.94[ASN][1000 genomes]
rs12371547	0.94[ASN][1000 genomes]
rs1520225	0.94[ASN][1000 genomes]
rs1548804	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607694	0.94[ASN][1000 genomes]
rs2110098	0.94[ASN][1000 genomes]
rs2159899	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2159900	0.91[ASN][1000 genomes]
rs2192139	0.94[ASN][1000 genomes]
rs2232956	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2232958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2418105	0.90[EUR][1000 genomes]
rs2418106	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418214	0.94[ASN][1000 genomes]
rs2418215	0.94[ASN][1000 genomes]
rs2418218	0.91[ASN][1000 genomes]
rs2900550	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2900552	0.94[ASN][1000 genomes]
rs3759250	0.97[ASN][1000 genomes]
rs3759251	0.85[ASN][1000 genomes]
rs3851578	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3906864	0.90[EUR][1000 genomes]
rs4281556	0.94[ASN][1000 genomes]
rs4763217	0.94[ASN][1000 genomes]
rs58051461	0.97[ASN][1000 genomes]
rs58836988	0.81[ASN][1000 genomes]
rs592864	0.88[ASN][1000 genomes]
rs60547308	0.97[ASN][1000 genomes]
rs60652912	0.88[ASN][1000 genomes]
rs612456	0.88[ASN][1000 genomes]
rs612808	0.81[EUR][1000 genomes]
rs621112	0.90[EUR][1000 genomes]
rs640372	0.88[ASN][1000 genomes]
rs646494	0.88[ASN][1000 genomes]
rs6488328	0.90[EUR][1000 genomes]
rs654834	0.88[ASN][1000 genomes]
rs666841	0.90[EUR][1000 genomes]
rs668521	0.88[ASN][1000 genomes]
rs669503	0.87[EUR][1000 genomes]
rs684208	0.87[EUR][1000 genomes]
rs7297167	0.83[ASN][1000 genomes]
rs7299578	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs741092	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs763839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7978300	0.94[ASN][1000 genomes]
rs953950	1.00[ASN][1000 genomes]
rs965243	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv898776	chr12:10909412-11032045	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7957888	TAS2R45	N/A	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10973600-11009600	Weak transcription	HSMM	muscle
2	chr12:10985400-10985800	Enhancers	Fetal Brain Male	brain

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