Variant report

Variant	rs7961626
Chromosome Location	chr12:51434279-51434280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10275	0.84[EUR][1000 genomes]
rs10783410	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876127	0.86[EUR][1000 genomes]
rs10876128	0.84[EUR][1000 genomes]
rs10876129	0.86[EUR][1000 genomes]
rs10876130	0.85[EUR][1000 genomes]
rs10876131	0.83[EUR][1000 genomes]
rs10876132	0.83[EUR][1000 genomes]
rs10876136	0.82[EUR][1000 genomes]
rs11169695	0.85[EUR][1000 genomes]
rs12427345	0.85[EUR][1000 genomes]
rs1486014	0.86[EUR][1000 genomes]
rs149411	0.86[EUR][1000 genomes]
rs15756	0.85[EUR][1000 genomes]
rs2029145	0.85[EUR][1000 genomes]
rs2029146	0.85[EUR][1000 genomes]
rs224575	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544019	0.81[EUR][1000 genomes]
rs2554856	0.86[EUR][1000 genomes]
rs319931	0.81[EUR][1000 genomes]
rs319936	0.80[EUR][1000 genomes]
rs319939	0.80[EUR][1000 genomes]
rs55874804	0.85[EUR][1000 genomes]
rs61934800	0.86[EUR][1000 genomes]
rs6580782	0.86[EUR][1000 genomes]
rs6580785	0.82[EUR][1000 genomes]
rs7136960	0.86[EUR][1000 genomes]
rs7976431	0.86[EUR][1000 genomes]
rs829017	0.80[EUR][1000 genomes]
rs9739342	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414501	chr12:51174503-51534707	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	esv34039	chr12:51326702-51671911	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7961626	LETMD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51430400-51434800	Weak transcription	Fetal Intestine Large	intestine
2	chr12:51432600-51434800	Weak transcription	HepG2	liver
3	chr12:51434000-51434400	Flanking Active TSS	Hela-S3	cervix
4	chr12:51434200-51434400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:51434200-51434800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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