Variant report

Variant	rs7967225
Chromosome Location	chr12:67310320-67310321
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67308306..67310520-chr12:67311991..67314710,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11832239	1.00[EUR][1000 genomes]
rs12311003	1.00[EUR][1000 genomes]
rs12315896	1.00[EUR][1000 genomes]
rs12422377	1.00[YRI][hapmap]
rs1526840	1.00[EUR][1000 genomes]
rs17103084	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17103108	1.00[EUR][1000 genomes]
rs17103356	1.00[EUR][1000 genomes]
rs2062860	1.00[EUR][1000 genomes]
rs57246267	1.00[EUR][1000 genomes]
rs57250913	1.00[EUR][1000 genomes]
rs7311891	1.00[EUR][1000 genomes]
rs73315209	1.00[EUR][1000 genomes]
rs73315213	1.00[EUR][1000 genomes]
rs73315223	1.00[EUR][1000 genomes]
rs73315226	1.00[EUR][1000 genomes]
rs73315253	1.00[EUR][1000 genomes]
rs73317181	1.00[EUR][1000 genomes]
rs73317201	1.00[EUR][1000 genomes]
rs73318916	1.00[EUR][1000 genomes]
rs73320908	1.00[EUR][1000 genomes]
rs73333072	1.00[EUR][1000 genomes]
rs73333073	1.00[EUR][1000 genomes]
rs7965522	1.00[EUR][1000 genomes]
rs7978079	1.00[EUR][1000 genomes]
rs7978516	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1053250	chr12:67067995-67381411	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1050547	chr12:67122154-67314886	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv541521	chr12:67122154-67314886	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1037144	chr12:67203280-67325187	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1044939	chr12:67207260-67377982	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1036984	chr12:67273098-67427543	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1054433	chr12:67302689-67357930	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv541523	chr12:67302689-67357930	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv521008	chr12:67305277-67322614	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67308600-67310400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr12:67308600-67310400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:67308600-67311400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr12:67308800-67310400	Enhancers	Primary T cells from cord blood	blood
5	chr12:67309000-67311200	Enhancers	HMEC	breast
6	chr12:67309400-67314800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:67309600-67310400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:67309800-67316200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:67310000-67314000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:67310200-67311000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:67310200-67311200	Enhancers	NHEK	skin
12	chr12:67310200-67313000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr12:67310200-67313000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr12:67310200-67318600	Weak transcription	Placenta	Placenta

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