Variant report

Variant	rs7969251
Chromosome Location	chr12:51075103-51075104
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51074554..51076965-chr12:51096673..51099522,2	MCF-7	breast:
2	chr12:51070223..51073044-chr12:51074608..51077031,3	MCF-7	breast:
3	chr12:51068341..51069854-chr12:51073678..51075524,2	K562	blood:
4	chr12:51073792..51075875-chr12:51081650..51083302,2	K562	blood:
5	chr12:50897570..50900429-chr12:51073442..51075914,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066084	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10506296	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10735827	0.81[ASN][1000 genomes]
rs10747592	0.81[ASN][1000 genomes]
rs10783388	0.81[ASN][1000 genomes]
rs10876082	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876083	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876085	0.81[ASN][1000 genomes]
rs10876088	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10876091	0.80[ASN][1000 genomes]
rs11169551	0.86[ASN][1000 genomes]
rs11169553	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11169556	0.82[ASN][1000 genomes]
rs12099615	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12296379	0.82[EUR][1000 genomes]
rs13328926	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1402693	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1521515	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1521517	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1561422	0.81[ASN][1000 genomes]
rs17124888	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17124907	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1815010	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1996750	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2246840	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2252595	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2684886	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2684890	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2684891	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2684902	0.81[AMR][1000 genomes]
rs2684906	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2700486	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28414775	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28479152	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3803181	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825401	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4132432	0.82[AMR][1000 genomes]
rs4143663	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4306347	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4517607	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4562889	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4768909	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4768915	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768920	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56753963	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56818625	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57328764	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57512759	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58301497	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58943330	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59194948	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59284993	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59683461	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60239257	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60494920	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60908906	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580766	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6580767	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6580768	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6580770	0.81[ASN][1000 genomes]
rs7132443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7303202	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7306387	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7308872	0.95[ASN][1000 genomes]
rs7310507	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7487645	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7953880	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7978443	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7979184	0.84[AMR][1000 genomes]
rs7979474	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs865490	0.82[EUR][1000 genomes]
rs939631	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs951591	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
2	chr12:51028400-51092400	Weak transcription	Gastric	stomach
3	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
4	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
6	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:51056400-51079200	Weak transcription	HSMM	muscle
9	chr12:51056400-51079600	Weak transcription	Fetal Kidney	kidney
10	chr12:51056600-51079400	Weak transcription	Fetal Heart	heart
11	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
14	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
16	chr12:51061200-51080200	Weak transcription	Right Ventricle	heart
17	chr12:51062200-51080400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr12:51062600-51091800	Strong transcription	Liver	Liver
19	chr12:51063000-51079600	Weak transcription	Brain Angular Gyrus	brain
20	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr12:51063800-51079800	Weak transcription	NHLF	lung
24	chr12:51063800-51085600	Strong transcription	Primary T cells from cord blood	blood
25	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
26	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:51064600-51078800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr12:51064800-51078600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr12:51065200-51079400	Weak transcription	Aorta	Aorta
32	chr12:51065200-51081800	Weak transcription	Spleen	Spleen
33	chr12:51065800-51076800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:51066200-51080000	Weak transcription	Colon Smooth Muscle	Colon
35	chr12:51067200-51082600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:51067200-51084600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr12:51067200-51085400	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr12:51067400-51076400	Strong transcription	HepG2	liver
39	chr12:51067400-51078400	Strong transcription	Dnd41	blood
40	chr12:51067400-51085400	Strong transcription	Primary B cells from cord blood	blood
41	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr12:51067600-51080400	Weak transcription	Esophagus	oesophagus
45	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr12:51068000-51077000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr12:51068200-51078000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr12:51068200-51078000	Strong transcription	GM12878-XiMat	blood
49	chr12:51068200-51078600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell

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