Variant report

Variant	rs7971447
Chromosome Location	chr12:86434578-86434579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10779224	0.91[ASN][1000 genomes]
rs10779225	0.91[ASN][1000 genomes]
rs10779227	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863128	1.00[ASN][1000 genomes]
rs10863129	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863131	0.91[ASN][1000 genomes]
rs11117148	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11117149	0.91[ASN][1000 genomes]
rs11117150	0.91[ASN][1000 genomes]
rs11513955	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11611607	0.92[AFR][1000 genomes]
rs12298516	0.91[ASN][1000 genomes]
rs1847206	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35629197	0.83[AFR][1000 genomes]
rs61929393	0.83[AFR][1000 genomes]
rs61929399	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61929424	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61931064	0.91[ASN][1000 genomes]
rs61931120	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61931121	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6539944	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6539947	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7136221	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721829	0.91[ASN][1000 genomes]
rs7295033	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7307686	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177179	0.83[AFR][1000 genomes]
rs7398950	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7485853	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965726	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs839091	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9738989	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv798	chr12:86399822-86447451	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv820997	chr12:86425986-86434829	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86433800-86434600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links