Variant report

Variant	rs7977713
Chromosome Location	chr12:124332956-124332957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:124329999..124332885-chr12:124332920..124335378,2	K562	blood:
2	chr12:124332831..124334511-chr12:124351979..124354225,2	MCF-7	breast:
3	chr12:124325505..124327128-chr12:124330558..124333209,2	K562	blood:
4	chr12:124331556..124334545-chr12:124336250..124337801,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10773039	0.87[ASN][1000 genomes]
rs10773040	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10773041	0.85[ASN][1000 genomes]
rs10773046	0.90[JPT][hapmap]
rs10846560	0.83[EUR][1000 genomes]
rs10846561	0.81[CEU][hapmap]
rs10846562	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10846564	0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10846567	0.84[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10846570	0.90[JPT][hapmap]
rs10846571	0.90[JPT][hapmap]
rs10846572	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs10846573	0.90[JPT][hapmap]
rs10846574	0.84[JPT][hapmap]
rs11057381	0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11057383	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs11057388	0.90[JPT][hapmap]
rs11057390	0.89[JPT][hapmap]
rs12306328	0.90[JPT][hapmap]
rs12307524	0.90[JPT][hapmap]
rs12309481	0.90[JPT][hapmap]
rs1317312	0.85[JPT][hapmap]
rs1317386	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs1882489	0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1922258	0.85[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2341779	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4930727	0.82[ASN][1000 genomes]
rs6488905	0.92[ASN][1000 genomes]
rs6488907	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6488910	0.90[JPT][hapmap]
rs7296123	0.80[CHB][hapmap];0.91[JPT][hapmap]
rs7297429	0.83[ASN][1000 genomes]
rs7300037	0.81[ASN][1000 genomes]
rs7313897	0.85[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7314278	0.90[JPT][hapmap]
rs7314335	0.83[ASN][1000 genomes]
rs7959519	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7960854	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7961179	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7976319	0.90[JPT][hapmap]
rs7977078	0.90[JPT][hapmap]
rs9669530	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124326000-124341600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:124331400-124352800	Weak transcription	Fetal Brain Female	brain
3	chr12:124332800-124333000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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