Variant report

Variant	rs7979294
Chromosome Location	chr12:11731773-11731774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:11730343..11732400-chr12:12028569..12030434,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11054355	1.00[EUR][1000 genomes]
rs16934966	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16935143	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs728376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7305726	1.00[AMR][1000 genomes]
rs7308344	1.00[AMR][1000 genomes]
rs7313356	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7956458	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7972427	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7975888	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11728800-11734000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr12:11729000-11731800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:11729000-11732000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:11729200-11732600	Weak transcription	NH-A	brain
5	chr12:11729200-11733200	Weak transcription	Thymus	Thymus
6	chr12:11729400-11732400	Weak transcription	Aorta	Aorta
7	chr12:11729600-11733000	Weak transcription	Colon Smooth Muscle	Colon
8	chr12:11729600-11733200	Weak transcription	HUVEC	blood vessel
9	chr12:11729800-11733400	Weak transcription	Esophagus	oesophagus
10	chr12:11730400-11732000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr12:11730400-11733200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr12:11730800-11732600	Enhancers	Primary B cells from peripheral blood	blood
13	chr12:11730800-11762200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:11731000-11732200	Weak transcription	HMEC	breast
15	chr12:11731000-11732400	Weak transcription	Osteobl	bone
16	chr12:11731000-11733000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr12:11731000-11733000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:11731000-11733200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:11731000-11733200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:11731200-11732400	Weak transcription	NHEK	skin
21	chr12:11731200-11733000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr12:11731200-11733000	Weak transcription	NHDF-Ad	bronchial
23	chr12:11731200-11733000	Weak transcription	NHLF	lung
24	chr12:11731200-11734600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr12:11731600-11732200	Enhancers	Primary B cells from cord blood	blood
26	chr12:11731600-11732600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:11731600-11733800	Flanking Active TSS	GM12878-XiMat	blood

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