Variant report

Variant	rs7979846
Chromosome Location	chr12:86446561-86446562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10506927	0.81[ASW][hapmap];0.89[GIH][hapmap];0.88[JPT][hapmap]
rs10779233	0.84[GIH][hapmap];0.88[JPT][hapmap]
rs10779235	0.88[JPT][hapmap]
rs10779239	1.00[JPT][hapmap]
rs10863157	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10863160	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10863161	1.00[JPT][hapmap]
rs10863163	0.88[JPT][hapmap]
rs11117181	0.86[JPT][hapmap]
rs11832376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11835137	1.00[ASN][1000 genomes]
rs12298174	0.89[GIH][hapmap];0.88[JPT][hapmap]
rs12308575	0.81[CEU][hapmap]
rs12313444	1.00[JPT][hapmap]
rs12321159	0.84[GIH][hapmap]
rs6539942	0.81[YRI][hapmap]
rs7132527	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7136697	0.88[JPT][hapmap]
rs7299005	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7305869	0.80[YRI][hapmap]
rs73380008	1.00[ASN][1000 genomes]
rs73392038	1.00[ASN][1000 genomes]
rs73392040	1.00[ASN][1000 genomes]
rs73392058	0.96[ASN][1000 genomes]
rs7486295	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs7486522	0.88[JPT][hapmap]
rs7955173	0.82[YRI][hapmap]
rs7966352	0.83[YRI][hapmap]
rs7980653	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	nsv798	chr12:86399822-86447451	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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