Variant report

Variant	rs7981546
Chromosome Location	chr13:76404636-76404637
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:76404550-76404777	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
LMO7	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11617789	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12323251	0.85[ASN][1000 genomes]
rs12429913	0.85[ASN][1000 genomes]
rs3736859	0.85[ASN][1000 genomes]
rs3783024	1.00[ASN][1000 genomes]
rs4884021	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4884023	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885352	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982790	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573664	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573665	1.00[ASN][1000 genomes]
rs9573667	1.00[ASN][1000 genomes]
rs9593132	0.85[ASN][1000 genomes]
rs9600559	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76370400-76415600	Weak transcription	Primary B cells from cord blood	blood
2	chr13:76373000-76414600	Weak transcription	HMEC	breast
3	chr13:76376800-76415400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr13:76377600-76415800	Weak transcription	Dnd41	blood
5	chr13:76377600-76416200	Weak transcription	A549	lung
6	chr13:76378200-76415800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr13:76378400-76415600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr13:76380600-76405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:76387800-76415800	Weak transcription	Brain Germinal Matrix	brain
10	chr13:76387800-76427200	Weak transcription	Ovary	ovary
11	chr13:76388000-76415200	Weak transcription	Fetal Brain Female	brain
12	chr13:76388800-76415400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:76389400-76414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:76390400-76405600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:76391000-76405600	Strong transcription	Liver	Liver
16	chr13:76391200-76418600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr13:76391200-76431600	Strong transcription	Hela-S3	cervix
18	chr13:76391600-76415200	Weak transcription	Brain Hippocampus Middle	brain
19	chr13:76392400-76415600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:76393000-76416000	Weak transcription	Brain Angular Gyrus	brain
21	chr13:76393200-76405600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:76393200-76405600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr13:76393400-76415800	Weak transcription	Psoas Muscle	Psoas
24	chr13:76393600-76414400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:76393600-76416000	Weak transcription	Fetal Lung	lung
26	chr13:76393800-76405600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr13:76394200-76415400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr13:76394400-76435800	Weak transcription	Colon Smooth Muscle	Colon
29	chr13:76394800-76415800	Weak transcription	Adipose Nuclei	Adipose
30	chr13:76395600-76414400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr13:76396400-76432000	Weak transcription	Brain Substantia Nigra	brain
32	chr13:76396400-76436800	Weak transcription	Fetal Brain Male	brain
33	chr13:76396800-76415600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:76396800-76416200	Weak transcription	Fetal Kidney	kidney
35	chr13:76397200-76405400	Strong transcription	Fetal Intestine Large	intestine
36	chr13:76398400-76405000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr13:76398400-76415400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:76398400-76415600	Weak transcription	Brain Anterior Caudate	brain
39	chr13:76398400-76415600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr13:76398600-76414600	Weak transcription	Colonic Mucosa	Colon
41	chr13:76398600-76415200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr13:76399000-76433200	Weak transcription	Small Intestine	intestine
43	chr13:76399200-76406400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr13:76399800-76405400	Weak transcription	GM12878-XiMat	blood
45	chr13:76399800-76433000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr13:76400000-76414200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr13:76400200-76405600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr13:76400400-76405200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr13:76400800-76405600	Weak transcription	Pancreas	Pancrea
50	chr13:76400800-76414400	Weak transcription	Gastric	stomach

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