Variant report

Variant	rs7987478
Chromosome Location	chr13:67542554-67542555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1022866	1.00[JPT][hapmap]
rs10492596	1.00[JPT][hapmap]
rs10492597	1.00[JPT][hapmap]
rs10507741	1.00[CHB][hapmap]
rs11148738	1.00[JPT][hapmap]
rs1323911	1.00[JPT][hapmap]
rs1323917	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1323923	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408170	1.00[JPT][hapmap]
rs17195266	1.00[JPT][hapmap]
rs17517286	1.00[CHB][hapmap]
rs17517438	1.00[CHB][hapmap]
rs17587572	1.00[JPT][hapmap]
rs17588668	1.00[CHB][hapmap]
rs17589427	1.00[CHB][hapmap]
rs17791001	1.00[JPT][hapmap]
rs17791056	1.00[JPT][hapmap]
rs1924309	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1924310	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1927812	1.00[CHB][hapmap]
rs260139	1.00[JPT][hapmap]
rs260140	1.00[JPT][hapmap]
rs260160	1.00[JPT][hapmap]
rs260168	1.00[JPT][hapmap]
rs2875517	1.00[CHB][hapmap]
rs61959219	0.84[ASN][1000 genomes]
rs7330064	1.00[CHB][hapmap]
rs7981987	1.00[JPT][hapmap]
rs7987190	1.00[JPT][hapmap]
rs7999949	1.00[CHB][hapmap]
rs8001394	1.00[CHB][hapmap]
rs9317632	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9317633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9317637	1.00[JPT][hapmap]
rs9317642	1.00[CHB][hapmap]
rs9529158	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9529163	1.00[JPT][hapmap]
rs9529170	1.00[JPT][hapmap]
rs9529174	1.00[JPT][hapmap]
rs9529180	1.00[JPT][hapmap]
rs9529181	1.00[JPT][hapmap]
rs9529188	1.00[CHB][hapmap]
rs9529190	1.00[CHB][hapmap]
rs9540947	0.84[ASN][1000 genomes]
rs9540949	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9540950	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9540952	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9540953	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9540954	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9540956	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9540958	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9540959	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9540960	0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9540964	0.82[ASN][1000 genomes]
rs9540967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9540971	1.00[JPT][hapmap]
rs9540983	1.00[JPT][hapmap]
rs9540988	1.00[JPT][hapmap]
rs9540993	1.00[JPT][hapmap]
rs9540995	1.00[JPT][hapmap]
rs9540996	1.00[JPT][hapmap]
rs9541006	1.00[CHB][hapmap]
rs9541007	1.00[CHB][hapmap]
rs9541008	1.00[CHB][hapmap]
rs9541012	1.00[CHB][hapmap]
rs9541013	1.00[CHB][hapmap]
rs9541015	1.00[CHB][hapmap]
rs9571705	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645951	0.82[ASN][1000 genomes]
rs980150	0.88[ASW][hapmap];0.85[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900407	chr13:67434161-67603745	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900411	chr13:67511430-67546608	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900412	chr13:67512877-67572221	Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv900413	chr13:67515590-67550301	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv900415	chr13:67521014-67542554	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67541600-67543000	Enhancers	Fetal Brain Male	brain
2	chr13:67541800-67543200	Enhancers	Brain Cingulate Gyrus	brain
3	chr13:67541800-67543800	Enhancers	Brain Hippocampus Middle	brain
4	chr13:67542000-67542600	Enhancers	Brain Anterior Caudate	brain
5	chr13:67542000-67542800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr13:67542000-67543800	Enhancers	Fetal Brain Female	brain
7	chr13:67542000-67544200	Enhancers	Brain Substantia Nigra	brain
8	chr13:67542200-67542800	Enhancers	Brain Angular Gyrus	brain

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