Variant report

Variant	rs7987510
Chromosome Location	chr13:96807771-96807772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96806648..96808895-chr13:96812833..96815729,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1015068	0.85[CEU][hapmap];0.98[TSI][hapmap]
rs11070157	0.85[CEU][hapmap];0.98[TSI][hapmap]
rs1114308	0.98[TSI][hapmap]
rs11841021	0.93[TSI][hapmap]
rs11842755	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1540609	0.87[EUR][1000 genomes]
rs17189951	0.85[CEU][hapmap]
rs1872161	0.85[CEU][hapmap]
rs1927808	0.81[AMR][1000 genomes]
rs2026818	0.88[TSI][hapmap]
rs2026819	0.85[CEU][hapmap]
rs2062276	0.85[CEU][hapmap];0.98[TSI][hapmap]
rs2149317	0.84[AMR][1000 genomes]
rs3759441	0.85[CEU][hapmap]
rs3759442	0.85[CEU][hapmap]
rs3782989	0.85[CEU][hapmap]
rs3825424	0.85[CEU][hapmap];0.98[TSI][hapmap]
rs4771923	0.85[CEU][hapmap]
rs6492827	0.81[CEU][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs6492828	0.85[CEU][hapmap]
rs6492835	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7324113	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7325915	0.81[CEU][hapmap]
rs7328389	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7334508	0.81[CEU][hapmap]
rs7336088	0.85[CEU][hapmap];0.95[TSI][hapmap]
rs7338224	0.85[CEU][hapmap]
rs7983589	0.81[CEU][hapmap]
rs7995922	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998353	0.85[CEU][hapmap]
rs9516642	0.86[AMR][1000 genomes]
rs9556517	0.85[CEU][hapmap]
rs9556521	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs9561998	0.81[CEU][hapmap]
rs9562012	0.85[CEU][hapmap]
rs9562025	0.87[EUR][1000 genomes]
rs9562027	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9562032	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9634487	0.85[CEU][hapmap]
rs9670470	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7987510	DNAJC3	cis	Nerve Tibial	GTEx
rs7987510	CLDN10	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96796600-96809000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:96800000-96816400	Weak transcription	Pancreas	Pancrea
3	chr13:96807600-96808600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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