Variant report

Variant	rs79894833
Chromosome Location	chr4:88292333-88292334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3436888	chr4:88291128-88295326	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2057903	chr4:88291693-88292396	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88254800-88311800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:88255000-88292400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:88255200-88293800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:88256200-88292800	Weak transcription	Gastric	stomach
5	chr4:88256200-88310600	Weak transcription	Right Ventricle	heart
6	chr4:88257800-88311800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:88267400-88308000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:88267600-88292400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:88267800-88306000	Weak transcription	Fetal Brain Female	brain
10	chr4:88271200-88298000	Weak transcription	HSMMtube	muscle
11	chr4:88273400-88298800	Weak transcription	Fetal Heart	heart
12	chr4:88274200-88296200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr4:88274400-88296400	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr4:88274400-88297000	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr4:88274400-88303400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr4:88274600-88296200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr4:88274600-88296400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:88274600-88296600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:88274600-88297200	Strong transcription	Fetal Intestine Large	intestine
20	chr4:88274800-88296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:88274800-88298200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:88275200-88292400	Weak transcription	GM12878-XiMat	blood
23	chr4:88275200-88296200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:88275200-88299400	Strong transcription	Dnd41	blood
25	chr4:88276000-88292400	Weak transcription	NHDF-Ad	bronchial
26	chr4:88276200-88292400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:88276200-88292600	Weak transcription	NHLF	lung
28	chr4:88276200-88296000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:88276200-88311400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:88276400-88292400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:88276400-88295800	Weak transcription	HMEC	breast
32	chr4:88276400-88302800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:88277000-88292400	Weak transcription	Brain Anterior Caudate	brain
34	chr4:88278000-88295800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr4:88278200-88292800	Weak transcription	Esophagus	oesophagus
36	chr4:88278400-88292400	Weak transcription	HSMM	muscle
37	chr4:88278600-88292600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr4:88278600-88292600	Weak transcription	Stomach Mucosa	stomach
39	chr4:88278800-88292400	Weak transcription	Brain Angular Gyrus	brain
40	chr4:88278800-88297200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr4:88279800-88297200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr4:88280200-88296400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr4:88280600-88296200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:88282600-88303200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr4:88283000-88295800	Strong transcription	Liver	Liver
46	chr4:88283400-88296600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:88284000-88292600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:88284800-88292400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr4:88284800-88292400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:88284800-88293800	Weak transcription	Hela-S3	cervix

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