Variant report

Variant	rs7990560
Chromosome Location	chr13:96269160-96269161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1000600	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4143093	0.89[ASN][1000 genomes]
rs4459440	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4497528	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302082	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9556489	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561901	0.87[ASN][1000 genomes]
rs9561907	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9590305	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
2	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
6	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:96249400-96272200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:96255000-96273000	Weak transcription	Brain Hippocampus Middle	brain
12	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr13:96256800-96270200	Weak transcription	Aorta	Aorta
14	chr13:96256800-96273000	Weak transcription	Gastric	stomach
15	chr13:96256800-96273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
17	chr13:96257000-96269400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr13:96258800-96273000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:96260000-96277000	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr13:96260200-96279000	Weak transcription	Liver	Liver
21	chr13:96260200-96293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr13:96260400-96270200	Weak transcription	HMEC	breast
23	chr13:96260400-96272600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr13:96260600-96279200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr13:96260800-96273000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:96260800-96277000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr13:96261000-96277000	Strong transcription	Fetal Stomach	stomach
28	chr13:96261000-96277200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr13:96261200-96270600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:96261200-96288400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr13:96261400-96273000	Weak transcription	Left Ventricle	heart
32	chr13:96261600-96272200	Weak transcription	Colon Smooth Muscle	Colon
33	chr13:96262000-96280800	Weak transcription	Fetal Heart	heart
34	chr13:96262200-96270800	Strong transcription	Ovary	ovary
35	chr13:96262200-96277000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:96262600-96275600	Strong transcription	Fetal Brain Female	brain
37	chr13:96262800-96270600	Strong transcription	Fetal Muscle Leg	muscle
38	chr13:96262800-96278000	Strong transcription	HSMM	muscle
39	chr13:96263200-96277000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr13:96263600-96290000	Weak transcription	Adipose Nuclei	Adipose
41	chr13:96264600-96270200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr13:96264800-96274200	Weak transcription	Fetal Brain Male	brain
43	chr13:96264800-96276200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr13:96265000-96272200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr13:96265000-96273000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr13:96265800-96293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr13:96266400-96277200	Strong transcription	HUVEC	blood vessel
48	chr13:96266400-96286000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr13:96267000-96274200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr13:96267400-96269400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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