Variant report

Variant	rs7992119
Chromosome Location	chr13:70381193-70381194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:70378542..70380046-chr13:70380685..70382460,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11148828	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs11618330	0.91[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs11618357	0.94[JPT][hapmap]
rs11619836	0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs12430131	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12583014	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12584126	1.00[JPT][hapmap]
rs12584317	0.94[JPT][hapmap]
rs12585046	0.88[ASN][1000 genomes]
rs1364377	0.88[YRI][hapmap]
rs1593176	0.94[JPT][hapmap]
rs1593177	0.83[JPT][hapmap]
rs17085396	0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs17727950	0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs17728004	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs17728354	0.85[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs17794771	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1890045	0.91[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs2059299	0.91[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs2325234	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs4304920	0.82[JPT][hapmap]
rs4344608	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57713566	0.97[ASN][1000 genomes]
rs60137040	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66985863	0.88[ASN][1000 genomes]
rs67089042	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67848439	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67934724	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73210502	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73212516	0.99[ASN][1000 genomes]
rs73212517	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7986686	0.94[JPT][hapmap]
rs7987637	0.91[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs7987960	0.86[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7988385	0.91[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs9317844	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap]
rs9317845	0.94[JPT][hapmap]
rs9529646	0.89[JPT][hapmap]
rs9564595	0.84[JPT][hapmap]
rs9564597	0.83[JPT][hapmap]
rs9564604	0.95[JPT][hapmap]
rs9564607	0.94[JPT][hapmap]
rs9564608	0.94[JPT][hapmap]
rs9564609	0.95[JPT][hapmap]
rs9564610	0.91[CEU][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs9564614	0.91[CEU][hapmap];0.94[JPT][hapmap]
rs9564618	0.87[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9564619	0.83[JPT][hapmap];0.97[ASN][1000 genomes]
rs9564620	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9564623	0.90[JPT][hapmap]
rs9572262	0.94[JPT][hapmap]
rs9572268	0.89[JPT][hapmap]
rs9572269	0.88[ASN][1000 genomes]
rs9572272	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs9572273	0.84[JPT][hapmap]
rs9572284	0.87[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs9572285	0.86[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap]
rs9572286	0.94[JPT][hapmap]
rs9572287	0.91[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs9572288	0.82[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]
rs9572289	0.95[JPT][hapmap]
rs9572291	0.91[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap]
rs9572294	0.87[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9572295	0.91[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634958	0.99[ASN][1000 genomes]
rs9634959	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634960	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs993138	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs993139	0.87[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs993140	0.93[ASN][1000 genomes]
rs993141	0.83[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv900484	chr13:70298300-70383876	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv900485	chr13:70302991-70383876	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv900486	chr13:70302991-70421896	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv832643	chr13:70324440-70486661	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv900487	chr13:70327693-70548643	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1041207	chr13:70347748-70473605	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70377400-70383200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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