Variant report

Variant	rs7992797
Chromosome Location	chr13:110660687-110660688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110658379..110661796-chr13:110663475..110666715,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11841329	1.00[EUR][1000 genomes]
rs16975290	1.00[EUR][1000 genomes]
rs58824458	1.00[EUR][1000 genomes]
rs60015252	1.00[EUR][1000 genomes]
rs60279490	1.00[EUR][1000 genomes]
rs61661904	1.00[EUR][1000 genomes]
rs7319834	1.00[EUR][1000 genomes]
rs7320392	1.00[EUR][1000 genomes]
rs7326006	1.00[EUR][1000 genomes]
rs7327695	1.00[EUR][1000 genomes]
rs7333839	1.00[EUR][1000 genomes]
rs7333840	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73612884	1.00[EUR][1000 genomes]
rs73612888	1.00[EUR][1000 genomes]
rs73612890	1.00[EUR][1000 genomes]
rs73612892	1.00[EUR][1000 genomes]
rs73612896	1.00[EUR][1000 genomes]
rs73612897	1.00[EUR][1000 genomes]
rs73612899	1.00[EUR][1000 genomes]
rs73615005	1.00[EUR][1000 genomes]
rs73624503	1.00[EUR][1000 genomes]
rs73624510	1.00[EUR][1000 genomes]
rs73624516	1.00[EUR][1000 genomes]
rs73624520	1.00[EUR][1000 genomes]
rs73624531	1.00[EUR][1000 genomes]
rs7982044	1.00[EUR][1000 genomes]
rs7982267	1.00[EUR][1000 genomes]
rs7983033	1.00[EUR][1000 genomes]
rs7983565	1.00[EUR][1000 genomes]
rs7984919	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7992629	1.00[EUR][1000 genomes]
rs7994376	0.97[AFR][1000 genomes]
rs8000352	1.00[EUR][1000 genomes]
rs9301428	1.00[EUR][1000 genomes]
rs9301430	1.00[EUR][1000 genomes]
rs9583434	1.00[EUR][1000 genomes]
rs9583454	1.00[EUR][1000 genomes]
rs9583455	1.00[EUR][1000 genomes]
rs9583456	1.00[EUR][1000 genomes]
rs9583457	1.00[EUR][1000 genomes]
rs9583462	1.00[EUR][1000 genomes]
rs9588062	1.00[EUR][1000 genomes]
rs9588066	0.96[AFR][1000 genomes]
rs9588085	1.00[EUR][1000 genomes]
rs9588086	1.00[EUR][1000 genomes]
rs9588087	1.00[EUR][1000 genomes]
rs9588099	1.00[EUR][1000 genomes]
rs9588106	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110651800-110662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:110653600-110663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:110654000-110664000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:110655000-110662800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:110658800-110662800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:110658800-110663000	Weak transcription	A549	lung
7	chr13:110659000-110662400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:110659000-110662600	Weak transcription	HSMMtube	muscle
9	chr13:110659000-110662600	Weak transcription	Osteobl	bone
10	chr13:110659000-110662800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:110659000-110663400	Weak transcription	NHDF-Ad	bronchial
12	chr13:110659200-110661200	Weak transcription	HSMM	muscle
13	chr13:110659200-110662600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:110659200-110663000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:110659200-110663000	Weak transcription	NH-A	brain
16	chr13:110659200-110664000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:110659200-110664200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:110659200-110669800	Weak transcription	Pancreas	Pancrea
19	chr13:110659400-110662800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:110659400-110662800	Weak transcription	NHEK	skin
21	chr13:110659400-110663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:110659600-110661200	Weak transcription	HMEC	breast
23	chr13:110660000-110661200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr13:110660200-110664000	Weak transcription	Hela-S3	cervix
25	chr13:110660600-110661000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:110660600-110662000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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