Variant report

Variant	rs7996399
Chromosome Location	chr13:53680384-53680385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17054846	1.00[EUR][1000 genomes]
rs17054878	1.00[EUR][1000 genomes]
rs17054935	1.00[EUR][1000 genomes]
rs17054941	1.00[EUR][1000 genomes]
rs17055207	0.86[EUR][1000 genomes]
rs17055257	0.86[EUR][1000 genomes]
rs17055503	0.86[EUR][1000 genomes]
rs1885768	0.86[EUR][1000 genomes]
rs1909652	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2759678	1.00[EUR][1000 genomes]
rs2759680	1.00[EUR][1000 genomes]
rs2759681	1.00[EUR][1000 genomes]
rs2759691	1.00[EUR][1000 genomes]
rs2759696	1.00[EUR][1000 genomes]
rs2759697	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2759701	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2806990	1.00[EUR][1000 genomes]
rs2806992	1.00[EUR][1000 genomes]
rs2806998	1.00[EUR][1000 genomes]
rs2807007	1.00[EUR][1000 genomes]
rs35422016	0.86[EUR][1000 genomes]
rs7984449	1.00[EUR][1000 genomes]
rs7997868	1.00[EUR][1000 genomes]
rs8001825	1.00[EUR][1000 genomes]
rs877482	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53679400-53680800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53680000-53680800	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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