Variant report

Variant	rs7996657
Chromosome Location	chr13:87194322-87194323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11840587	0.86[EUR][1000 genomes]
rs7325956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551444	0.86[EUR][1000 genomes]
rs7984982	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047136	chr13:86979109-87555131	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900762	chr13:87073397-87353400	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900763	chr13:87073397-87658986	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900766	chr13:87078053-87204838	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900767	chr13:87093875-87204838	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047134	chr13:87094248-87356929	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv562618	chr13:87110325-87364635	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv900768	chr13:87116479-87204838	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900769	chr13:87116479-87208617	Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv900770	chr13:87140651-87204838	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv900771	chr13:87140651-87208617	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv900772	chr13:87140651-87235802	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv456055	chr13:87140651-87311967	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv562620	chr13:87140651-87311967	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv900773	chr13:87159109-87463100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv3332316	chr13:87179000-87207322	Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv900774	chr13:87182669-87263073	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv3417360	chr13:87184000-87206416	Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87193800-87195000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr13:87194200-87194600	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr13:87194200-87194600	Active TSS	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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