Variant report

Variant	rs7996733
Chromosome Location	chr13:51580114-51580115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12855373	0.88[ASN][1000 genomes]
rs12865703	0.89[ASN][1000 genomes]
rs12873300	0.88[ASN][1000 genomes]
rs2025945	0.81[EUR][1000 genomes]
rs2281992	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34806619	0.89[ASN][1000 genomes]
rs3790022	0.88[ASN][1000 genomes]
rs7322013	0.89[EUR][1000 genomes]
rs7332630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996960	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316514	0.89[ASN][1000 genomes]
rs9526715	0.89[ASN][1000 genomes]
rs9535554	0.89[ASN][1000 genomes]
rs9535555	0.89[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr13:51577800-51580200	Enhancers	Brain Germinal Matrix	brain
3	chr13:51577800-51581000	Enhancers	Fetal Muscle Leg	muscle
4	chr13:51578200-51580200	Enhancers	Fetal Muscle Trunk	muscle
5	chr13:51578200-51581800	Enhancers	Fetal Intestine Large	intestine
6	chr13:51578800-51580200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:51578800-51581800	Enhancers	Fetal Intestine Small	intestine
8	chr13:51579000-51580400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:51579200-51581200	Enhancers	HSMMtube	muscle
10	chr13:51579400-51580400	Enhancers	HepG2	liver
11	chr13:51579400-51581600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:51579400-51583800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:51579600-51580600	Weak transcription	Fetal Stomach	stomach
14	chr13:51579600-51581000	Enhancers	Duodenum Mucosa	Duodenum
15	chr13:51579600-51581400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr13:51579800-51581200	Enhancers	Aorta	Aorta
17	chr13:51580000-51580200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links