Variant report

Variant	rs7996960
Chromosome Location	chr13:51580305-51580306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12855373	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs12865703	0.89[ASN][1000 genomes]
rs12873300	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs2025945	0.88[CEU][hapmap]
rs2281992	0.92[CEU][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34806619	0.89[ASN][1000 genomes]
rs3790022	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs7322013	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7332630	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334102	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996733	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316514	0.93[CHB][hapmap];0.89[ASN][1000 genomes]
rs9526715	0.93[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9535554	0.81[CHB][hapmap];0.89[ASN][1000 genomes]
rs9535555	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7996960	GNPDA1	cis	Cerebellum	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51577800-51581000	Enhancers	Fetal Muscle Leg	muscle
2	chr13:51578200-51581800	Enhancers	Fetal Intestine Large	intestine
3	chr13:51578800-51581800	Enhancers	Fetal Intestine Small	intestine
4	chr13:51579000-51580400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:51579200-51581200	Enhancers	HSMMtube	muscle
6	chr13:51579400-51580400	Enhancers	HepG2	liver
7	chr13:51579400-51581600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:51579400-51583800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:51579600-51580600	Weak transcription	Fetal Stomach	stomach
10	chr13:51579600-51581000	Enhancers	Duodenum Mucosa	Duodenum
11	chr13:51579600-51581400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr13:51579800-51581200	Enhancers	Aorta	Aorta
13	chr13:51580200-51580400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:51580200-51580600	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr13:51580200-51580800	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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