Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17054846	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054878	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054935	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054941	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17055207	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17055257	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17055503	0.86[EUR][1000 genomes]
rs1885768	0.86[EUR][1000 genomes]
rs1909652	1.00[EUR][1000 genomes]
rs2759678	1.00[EUR][1000 genomes]
rs2759680	1.00[EUR][1000 genomes]
rs2759681	1.00[EUR][1000 genomes]
rs2759691	1.00[EUR][1000 genomes]
rs2759696	1.00[EUR][1000 genomes]
rs2759697	1.00[EUR][1000 genomes]
rs2759701	1.00[EUR][1000 genomes]
rs2806990	1.00[EUR][1000 genomes]
rs2806992	1.00[EUR][1000 genomes]
rs2806998	1.00[EUR][1000 genomes]
rs2807007	1.00[EUR][1000 genomes]
rs35422016	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7984449	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996399	1.00[EUR][1000 genomes]
rs8001825	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs877482	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53745400-53750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:53745800-53748800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:53746000-53748600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:53746200-53748200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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