Variant report

Variant	rs8000352
Chromosome Location	chr13:110708183-110708184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110622829..110625818-chr13:110706404..110708409,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11841329	1.00[EUR][1000 genomes]
rs16975290	1.00[EUR][1000 genomes]
rs521699	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56294719	1.00[EUR][1000 genomes]
rs57652802	1.00[EUR][1000 genomes]
rs58702949	1.00[EUR][1000 genomes]
rs58824458	1.00[EUR][1000 genomes]
rs60015252	1.00[EUR][1000 genomes]
rs60279490	1.00[EUR][1000 genomes]
rs61661904	1.00[EUR][1000 genomes]
rs626680	1.00[EUR][1000 genomes]
rs645511	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs666338	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7319834	1.00[EUR][1000 genomes]
rs7320392	1.00[EUR][1000 genomes]
rs7326006	1.00[EUR][1000 genomes]
rs7327695	1.00[EUR][1000 genomes]
rs7332823	1.00[EUR][1000 genomes]
rs7333839	1.00[EUR][1000 genomes]
rs7333840	1.00[EUR][1000 genomes]
rs7337040	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73611449	1.00[EUR][1000 genomes]
rs73612890	1.00[EUR][1000 genomes]
rs73612892	1.00[EUR][1000 genomes]
rs73612896	1.00[EUR][1000 genomes]
rs73612897	1.00[EUR][1000 genomes]
rs73612899	1.00[EUR][1000 genomes]
rs73615005	1.00[EUR][1000 genomes]
rs73624503	1.00[EUR][1000 genomes]
rs73624510	1.00[EUR][1000 genomes]
rs73624516	1.00[EUR][1000 genomes]
rs73624520	1.00[EUR][1000 genomes]
rs73624531	1.00[EUR][1000 genomes]
rs7982044	1.00[EUR][1000 genomes]
rs7982267	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7983033	1.00[EUR][1000 genomes]
rs7983565	1.00[EUR][1000 genomes]
rs7984919	1.00[EUR][1000 genomes]
rs7992629	1.00[EUR][1000 genomes]
rs7992797	1.00[EUR][1000 genomes]
rs9301428	1.00[EUR][1000 genomes]
rs9301430	1.00[EUR][1000 genomes]
rs9583454	1.00[EUR][1000 genomes]
rs9583455	1.00[EUR][1000 genomes]
rs9583456	1.00[EUR][1000 genomes]
rs9583457	1.00[EUR][1000 genomes]
rs9583462	1.00[EUR][1000 genomes]
rs9588062	1.00[EUR][1000 genomes]
rs9588085	1.00[EUR][1000 genomes]
rs9588086	1.00[EUR][1000 genomes]
rs9588087	1.00[EUR][1000 genomes]
rs9588099	1.00[EUR][1000 genomes]
rs9588106	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110706600-110708200	ZNF genes & repeats	Aorta	Aorta
2	chr13:110706800-110708400	Enhancers	Dnd41	blood
3	chr13:110707400-110708200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:110707400-110708200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:110707400-110708400	Enhancers	HMEC	breast
6	chr13:110707600-110714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:110707800-110714200	Weak transcription	HSMMtube	muscle
8	chr13:110708000-110708400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links