Variant report

Variant	rs8001464
Chromosome Location	chr13:67605228-67605229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10492594	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10492595	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1323902	0.80[EUR][1000 genomes]
rs1323904	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1323926	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1323927	0.86[EUR][1000 genomes]
rs17070560	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17082029	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17082030	0.80[EUR][1000 genomes]
rs17082032	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17082048	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17082049	0.80[EUR][1000 genomes]
rs17082052	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17082105	1.00[CEU][hapmap]
rs17195224	1.00[YRI][hapmap]
rs7319864	0.86[EUR][1000 genomes]
rs74096719	0.86[EUR][1000 genomes]
rs74096720	0.86[EUR][1000 genomes]
rs8001867	1.00[CEU][hapmap]
rs972201	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs972202	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67597800-67606200	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:67598400-67606000	Weak transcription	Brain Substantia Nigra	brain
3	chr13:67602600-67606200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:67604200-67606800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:67604600-67610400	Weak transcription	Brain Angular Gyrus	brain

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