Variant report

Variant	rs8002635
Chromosome Location	chr13:76291960-76291961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76272265..76273781-chr13:76290115..76292337,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1092601	0.86[ASN][1000 genomes]
rs1323712	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1408060	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1535730	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1924214	0.86[ASN][1000 genomes]
rs2025354	0.95[ASN][1000 genomes]
rs2328953	0.86[ASN][1000 genomes]
rs2328956	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2761398	0.86[ASN][1000 genomes]
rs34545980	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs480929	0.87[ASN][1000 genomes]
rs4885345	0.86[ASN][1000 genomes]
rs4885349	0.89[ASW][hapmap]
rs504273	0.88[ASN][1000 genomes]
rs528783	0.83[ASN][1000 genomes]
rs585233	0.86[ASN][1000 genomes]
rs607095	0.86[ASN][1000 genomes]
rs636580	0.91[ASN][1000 genomes]
rs7320216	0.89[ASW][hapmap];0.82[LWK][hapmap]
rs7336908	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs776527	0.86[ASN][1000 genomes]
rs7986141	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991448	0.83[ASW][hapmap];0.82[LWK][hapmap]
rs9544028	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9544029	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9544034	0.96[ASN][1000 genomes]
rs9544035	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9573627	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1091	chr13:76282392-76327906	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259600-76294400	Weak transcription	Ovary	ovary
2	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
3	chr13:76283600-76308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:76286600-76292600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:76287800-76292600	Enhancers	Hela-S3	cervix
6	chr13:76288200-76297800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:76289000-76292000	Genic enhancers	NHDF-Ad	bronchial
8	chr13:76289200-76294600	Weak transcription	Stomach Mucosa	stomach
9	chr13:76289800-76292200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:76289800-76292600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:76289800-76292800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:76290000-76292000	Enhancers	HUVEC	blood vessel
13	chr13:76290600-76293600	Weak transcription	NHLF	lung
14	chr13:76290600-76293800	Weak transcription	HSMMtube	muscle
15	chr13:76290600-76298000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:76290600-76298200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:76290600-76298200	Weak transcription	Aorta	Aorta
18	chr13:76290600-76298400	Weak transcription	Fetal Lung	lung
19	chr13:76290800-76292000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr13:76290800-76292400	Weak transcription	NH-A	brain
21	chr13:76290800-76299000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr13:76291200-76292000	Enhancers	Placenta	Placenta
23	chr13:76291600-76292400	Genic enhancers	Osteobl	bone
24	chr13:76291600-76298000	Strong transcription	HSMM	muscle
25	chr13:76291800-76292000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:76291800-76292600	Enhancers	Fetal Kidney	kidney
27	chr13:76291800-76297200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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