Variant report

Variant	rs8004669
Chromosome Location	chr14:65725217-65725218
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65723600..65725474-chr14:65822150..65825144,2	MCF-7	breast:
2	chr14:65687724..65702236-chr14:65717995..65729217,67	MCF-7	breast:
3	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:
4	chr14:65723281..65726603-chr14:65825964..65828012,3	MCF-7	breast:
5	chr14:65721905..65725444-chr14:65725472..65730269,4	MCF-7	breast:
6	chr14:65720143..65726834-chr14:65876571..65883583,24	MCF-7	breast:
7	chr14:65718344..65729728-chr14:65875413..65882756,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258878	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000255002	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2411916	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142951	0.92[YRI][hapmap]
rs72144340	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8003310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003992	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005384	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65720400-65725600	Enhancers	Fetal Intestine Large	intestine
4	chr14:65720600-65726000	Enhancers	HMEC	breast
5	chr14:65721600-65725600	Enhancers	Stomach Mucosa	stomach
6	chr14:65721600-65727000	Enhancers	HUVEC	blood vessel
7	chr14:65722200-65726000	Enhancers	A549	lung
8	chr14:65722200-65728400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:65723200-65726800	Weak transcription	Gastric	stomach
10	chr14:65723200-65727200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:65723400-65725600	Enhancers	HepG2	liver
12	chr14:65723400-65726000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:65723400-65726800	Weak transcription	Primary T cells from cord blood	blood
14	chr14:65723400-65727000	Enhancers	Hela-S3	cervix
15	chr14:65723600-65725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:65724000-65725600	Enhancers	Osteobl	bone
17	chr14:65724000-65726200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:65724000-65728800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:65724200-65725400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:65724200-65725400	Enhancers	NH-A	brain
21	chr14:65724200-65725600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:65724200-65725600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:65724200-65725800	Enhancers	NHLF	lung
24	chr14:65724200-65726000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr14:65724400-65725400	Enhancers	HSMM	muscle
26	chr14:65724400-65725600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:65724400-65725600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr14:65724400-65728200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr14:65724400-65728400	Enhancers	NHDF-Ad	bronchial
30	chr14:65724600-65725400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr14:65724600-65725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:65724800-65725600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:65725000-65725400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:65725000-65725600	Enhancers	NHEK	skin

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