Variant report

Variant	rs8006818
Chromosome Location	chr14:70587589-70587590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70587558..70588170-chr5:3065184..3066056,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10136228	0.85[GIH][hapmap]
rs1035716	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590688	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35460978	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3861684	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899331	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902778	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs4902780	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs4902784	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7142757	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7156495	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8011350	0.84[CEU][hapmap]
rs8019271	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs8020582	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70579800-70599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:70583400-70587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:70583400-70588600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:70583600-70599600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:70584000-70588000	Weak transcription	Fetal Brain Female	brain
6	chr14:70584000-70588200	Weak transcription	Fetal Brain Male	brain
7	chr14:70585600-70589200	Enhancers	Psoas Muscle	Psoas
8	chr14:70586600-70589400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:70586800-70587600	Enhancers	HSMMtube	muscle
10	chr14:70586800-70588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:70586800-70588000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:70586800-70589000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr14:70586800-70589200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:70587000-70587600	Enhancers	Osteobl	bone
15	chr14:70587200-70588000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr14:70587200-70588200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr14:70587200-70589000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr14:70587200-70589200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr14:70587200-70589200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:70587200-70589400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:70587400-70588000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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