Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:70069985..70071429-chr14:70193019..70194784,11	MCF-7	breast:
2	chr14:70069987..70071037-chr14:70175192..70175969,4	MCF-7	breast:
3	chr14:70070411..70072441-chr14:70102031..70104463,2	MCF-7	breast:
4	chr14:70070422..70070976-chr14:70193361..70193935,2	K562	blood:
5	chr14:70069582..70070996-chr14:70193095..70194856,22	MCF-7	breast:
6	chr14:70069707..70070969-chr14:70175120..70176175,7	MCF-7	breast:
7	chr14:70069839..70070933-chr14:70079326..70080176,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100650	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10145804	0.83[ASN][1000 genomes]
rs1275742	0.83[CHB][hapmap]
rs1275745	0.83[CHB][hapmap]
rs1275746	0.83[CHB][hapmap]
rs1295826	0.83[CHB][hapmap]
rs17107161	0.83[CHB][hapmap]
rs1743379	0.83[CHB][hapmap]
rs1999722	0.83[CHB][hapmap]
rs2025133	0.85[ASN][1000 genomes]
rs2210803	0.83[CHB][hapmap]
rs2332094	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899305	0.92[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs4902745	0.83[CHB][hapmap]
rs55817110	0.82[AMR][1000 genomes]
rs56249045	0.82[AMR][1000 genomes]
rs56791796	0.82[AMR][1000 genomes]
rs61980693	0.82[AMR][1000 genomes]
rs61980724	0.80[EUR][1000 genomes]
rs6573900	0.83[CHB][hapmap]
rs7143960	0.83[CHB][hapmap]
rs7146578	0.84[GIH][hapmap]
rs7151003	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs927387	0.92[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs945308	0.83[CHB][hapmap]
rs945309	0.83[CHB][hapmap]
rs945310	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70060400-70076600	Weak transcription	Brain Angular Gyrus	brain
2	chr14:70060800-70076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:70067200-70077000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:70067400-70077000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:70067600-70076600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:70068600-70071800	Weak transcription	HepG2	liver
7	chr14:70069000-70076800	Weak transcription	Right Atrium	heart
8	chr14:70070200-70070600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr14:70070200-70070800	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:70070200-70070800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr14:70070200-70070800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:70070200-70071200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:70070200-70071400	Enhancers	GM12878-XiMat	blood
14	chr14:70070400-70070600	Enhancers	Stomach Mucosa	stomach
15	chr14:70070400-70070800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr14:70070400-70076800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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