Variant report

Variant	rs8007762
Chromosome Location	chr14:77708465-77708466
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77606518..77608062-chr14:77708276..77710654,2	MCF-7	breast:
2	chr14:77707273..77709179-chr14:77710972..77713210,2	MCF-7	breast:
3	chr14:77698665..77701683-chr14:77707359..77710603,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269883	Chromatin interaction
ENSG00000177108	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17105594	0.86[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2287379	0.85[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs2287383	0.86[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2287385	0.91[CHB][hapmap]
rs425310	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs436221	1.00[CHB][hapmap]
rs55903932	0.93[EUR][1000 genomes]
rs55923743	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56245630	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56753733	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs57178676	0.91[EUR][1000 genomes]
rs59262654	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67130018	0.92[EUR][1000 genomes]
rs67366981	0.93[EUR][1000 genomes]
rs8003060	0.91[CHB][hapmap]
rs8004209	0.91[CHB][hapmap]
rs8006117	0.86[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8006676	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8006732	0.85[CEU][hapmap];0.91[CHB][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77686400-77712400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:77692800-77712400	Weak transcription	Fetal Intestine Small	intestine
4	chr14:77697600-77726800	Weak transcription	Brain Substantia Nigra	brain
5	chr14:77698400-77720000	Weak transcription	Pancreas	Pancrea
6	chr14:77701600-77710000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:77704800-77719200	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:77705600-77714400	Weak transcription	Brain Anterior Caudate	brain
9	chr14:77705800-77709600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:77706200-77710000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:77706800-77709000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:77706800-77709000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:77706800-77709600	Weak transcription	Spleen	Spleen
14	chr14:77707000-77710000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:77707200-77712800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:77707800-77709800	Weak transcription	Brain Germinal Matrix	brain
17	chr14:77707800-77710800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:77708000-77710600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:77708000-77711400	Enhancers	Primary B cells from cord blood	blood
20	chr14:77708000-77711400	Enhancers	Primary hematopoietic stem cells	blood
21	chr14:77708000-77711800	Enhancers	Primary B cells from peripheral blood	blood
22	chr14:77708400-77713400	Strong transcription	Brain Angular Gyrus	brain
23	chr14:77708400-77720600	Strong transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links