Variant report

Variant	rs80087508
Chromosome Location	chr15:78882233-78882234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78843350..78846204-chr15:78880835..78882358,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv518840	chr15:78871288-78887171	Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78859200-78882400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:78868000-78895800	Weak transcription	GM12878-XiMat	blood
3	chr15:78877400-78884400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:78877800-78890400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:78878800-78884000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:78880200-78883000	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:78880200-78893400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:78880200-78893800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:78880200-78897400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:78880400-78882600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:78881000-78884600	Weak transcription	Fetal Thymus	thymus
12	chr15:78881200-78883400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:78881400-78883000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:78881400-78883800	Weak transcription	HepG2	liver
15	chr15:78881400-78885400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:78881600-78883000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:78881600-78883200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:78881600-78883400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:78881600-78883600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:78881600-78893200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:78882000-78883200	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr15:78882000-78883400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:78882000-78883600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:78882000-78887000	Weak transcription	K562	blood
25	chr15:78882200-78883000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:78882200-78883000	Strong transcription	Thymus	Thymus
27	chr15:78882200-78883000	Strong transcription	A549	lung
28	chr15:78882200-78883200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:78882200-78883200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:78882200-78883200	Strong transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links