Variant report
| Variant | rs8010615 |
|---|---|
| Chromosome Location | chr14:37379028-37379029 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:37367159..37369476-chr14:37377905..37379855,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10146438 | 1.00[JPT][hapmap] |
| rs10149290 | 1.00[JPT][hapmap] |
| rs1156170 | 1.00[YRI][hapmap] |
| rs12878657 | 1.00[JPT][hapmap] |
| rs12881110 | 1.00[JPT][hapmap] |
| rs12887020 | 1.00[YRI][hapmap] |
| rs12896722 | 1.00[JPT][hapmap] |
| rs1367031 | 1.00[JPT][hapmap] |
| rs6571767 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs6571768 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs712390 | 1.00[JPT][hapmap] |
| rs712394 | 1.00[JPT][hapmap] |
| rs7143097 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7159402 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7159633 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs8017518 | 1.00[JPT][hapmap] |
| rs848693 | 1.00[JPT][hapmap] |
| rs848697 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs848698 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs848699 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047290 | chr14:36564568-37445157 | Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
