Variant report

Variant	rs8011313
Chromosome Location	chr14:32874470-32874471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1951180	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1956999	1.00[EUR][1000 genomes]
rs1957003	1.00[EUR][1000 genomes]
rs2025262	1.00[EUR][1000 genomes]
rs2145589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2145590	1.00[EUR][1000 genomes]
rs2145592	1.00[EUR][1000 genomes]
rs7140664	1.00[EUR][1000 genomes]
rs7157707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7158034	1.00[EUR][1000 genomes]
rs8010314	1.00[EUR][1000 genomes]
rs941741	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32865600-32876400	Weak transcription	Fetal Brain Male	brain
2	chr14:32866400-32876200	Weak transcription	Left Ventricle	heart
3	chr14:32867600-32876600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:32867600-32882800	Weak transcription	Fetal Brain Female	brain
5	chr14:32867800-32875800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:32868000-32876000	Weak transcription	Brain Angular Gyrus	brain
7	chr14:32870000-32876200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:32870200-32883000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:32871200-32874800	Enhancers	Fetal Heart	heart
10	chr14:32871400-32876200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:32872600-32878000	Enhancers	Brain Anterior Caudate	brain
12	chr14:32872600-32878000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr14:32872800-32874600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr14:32873400-32874600	Enhancers	Colon Smooth Muscle	Colon
15	chr14:32873600-32874600	Enhancers	HSMM	muscle
16	chr14:32873600-32874600	Enhancers	HSMMtube	muscle
17	chr14:32873600-32877000	Enhancers	Brain Hippocampus Middle	brain
18	chr14:32873800-32875200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:32873800-32881600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:32874000-32874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:32874000-32874600	Enhancers	Brain Germinal Matrix	brain
22	chr14:32874200-32874600	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:32874200-32875600	Enhancers	Brain Substantia Nigra	brain
24	chr14:32874200-32879200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr14:32874400-32874600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:32874400-32878400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:32874400-32878600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links