Variant report

Variant	rs8011972
Chromosome Location	chr14:72456154-72456155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1009018	0.93[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130235	0.89[AFR][1000 genomes]
rs10873248	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17768054	1.00[ASN][1000 genomes]
rs1978226	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2109268	0.93[CEU][hapmap];0.82[TSI][hapmap]
rs2190871	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2190872	0.80[CEU][hapmap]
rs2190874	0.86[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215133	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332706	0.87[CEU][hapmap]
rs2877772	0.87[EUR][1000 genomes]
rs2877773	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36319	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36320	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36322	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36323	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36324	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36325	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36328	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36329	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36330	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36331	0.86[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36333	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36334	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36337	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36338	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36339	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36342	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36343	0.86[EUR][1000 genomes]
rs36346	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36347	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36348	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36349	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36352	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36353	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36354	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36355	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36357	0.86[EUR][1000 genomes]
rs36358	0.82[EUR][1000 genomes]
rs36359	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36362	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36364	1.00[ASN][1000 genomes]
rs36365	1.00[ASN][1000 genomes]
rs36367	1.00[ASN][1000 genomes]
rs36371	1.00[ASN][1000 genomes]
rs36374	1.00[ASN][1000 genomes]
rs36400	1.00[ASN][1000 genomes]
rs36402	1.00[ASN][1000 genomes]
rs36407	1.00[ASN][1000 genomes]
rs36413	1.00[ASN][1000 genomes]
rs36414	1.00[ASN][1000 genomes]
rs4243639	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598834	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899406	0.86[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899408	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902959	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902962	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902967	0.93[CEU][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4902968	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4902969	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4902970	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4902972	1.00[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs61996396	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574036	0.93[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161413	0.93[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs722975	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728494	0.85[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728495	0.93[CEU][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728498	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs758236	0.93[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004427	0.93[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8014500	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917392	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991890	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72446000-72457000	Weak transcription	Right Ventricle	heart
2	chr14:72452200-72456600	Enhancers	Fetal Brain Male	brain
3	chr14:72453200-72457000	Enhancers	Fetal Heart	heart
4	chr14:72453600-72457000	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72454800-72456800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72455000-72456800	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:72455800-72456200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr14:72455800-72456400	Enhancers	Left Ventricle	heart
9	chr14:72455800-72456400	Enhancers	Right Atrium	heart
10	chr14:72456000-72456400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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