Variant report

Variant	rs8013835
Chromosome Location	chr14:32920364-32920365
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17099051	1.00[MEX][hapmap]
rs1957651	1.00[MEX][hapmap]
rs2383303	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147853	0.97[ASN][1000 genomes]
rs942028	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32909000-32923400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:32914400-32923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:32916400-32921000	Enhancers	Brain Substantia Nigra	brain
4	chr14:32918800-32920800	Enhancers	Fetal Heart	heart
5	chr14:32919000-32920800	Enhancers	Brain Angular Gyrus	brain
6	chr14:32919200-32920800	Enhancers	Brain Hippocampus Middle	brain
7	chr14:32919200-32926400	Weak transcription	NHDF-Ad	bronchial
8	chr14:32919400-32923200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:32919400-32923400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:32919600-32920400	Enhancers	Fetal Lung	lung
11	chr14:32919600-32926800	Weak transcription	Aorta	Aorta
12	chr14:32919800-32920800	Enhancers	Brain Anterior Caudate	brain
13	chr14:32919800-32926200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr14:32920000-32920800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:32920200-32920600	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:32920200-32920800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:32920200-32920800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:32920200-32920800	Enhancers	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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