Variant report

Variant	rs8014610
Chromosome Location	chr14:37587128-37587129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37492863..37493768-chr14:37586781..37587332,2	MCF-7	breast:
2	chr14:37411236..37411778-chr14:37586529..37587352,2	MCF-7	breast:
3	chr14:36918851..36919626-chr14:37586517..37587298,2	MCF-7	breast:
4	chr14:37578874..37583867-chr14:37583944..37587801,9	MCF-7	breast:
5	chr14:37443180..37446784-chr14:37583565..37587987,4	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1012198	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10134406	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10141752	0.87[EUR][1000 genomes]
rs10220604	0.87[EUR][1000 genomes]
rs1057564	0.95[EUR][1000 genomes]
rs1404	0.95[EUR][1000 genomes]
rs17106209	0.87[EUR][1000 genomes]
rs17106216	0.87[EUR][1000 genomes]
rs17106493	0.90[EUR][1000 genomes]
rs17178484	0.95[EUR][1000 genomes]
rs17178639	1.00[EUR][1000 genomes]
rs17178764	1.00[EUR][1000 genomes]
rs17767749	0.86[EUR][1000 genomes]
rs17767929	1.00[EUR][1000 genomes]
rs1884775	0.84[EUR][1000 genomes]
rs1950372	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1950814	0.87[EUR][1000 genomes]
rs1955758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1956424	0.84[EUR][1000 genomes]
rs2038309	0.95[EUR][1000 genomes]
rs2144318	0.87[EUR][1000 genomes]
rs2415373	0.86[EUR][1000 genomes]
rs2415379	0.87[EUR][1000 genomes]
rs2415380	0.87[EUR][1000 genomes]
rs2415386	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4356385	0.87[EUR][1000 genomes]
rs56666059	0.90[EUR][1000 genomes]
rs57235322	0.95[EUR][1000 genomes]
rs6571781	0.95[EUR][1000 genomes]
rs6571783	1.00[EUR][1000 genomes]
rs6571785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6571786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6571787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6571788	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7142723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151524	0.91[EUR][1000 genomes]
rs7159967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs725243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8009630	1.00[EUR][1000 genomes]
rs8012664	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8017826	0.82[EUR][1000 genomes]
rs8019489	0.87[EUR][1000 genomes]
rs976171	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564348	chr14:37584981-37608459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37582400-37587600	Enhancers	Hela-S3	cervix
2	chr14:37582400-37602800	Weak transcription	K562	blood
3	chr14:37586200-37591000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:37586400-37588000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr14:37586600-37587400	Weak transcription	HSMM	muscle
6	chr14:37586800-37587200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:37586800-37587400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:37586800-37587400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:37586800-37590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:37586800-37591600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:37587000-37591000	Weak transcription	HUVEC	blood vessel
12	chr14:37587000-37591000	Weak transcription	NH-A	brain
13	chr14:37587000-37591000	Weak transcription	NHEK	skin
14	chr14:37587000-37591200	Weak transcription	HMEC	breast
15	chr14:37587000-37591400	Weak transcription	HSMMtube	muscle
16	chr14:37587000-37595400	Weak transcription	Aorta	Aorta

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