Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37323565..37325232-chr14:37403567..37406309,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10136303	0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10149290	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs12587486	0.83[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs12878657	0.85[EUR][1000 genomes]
rs12896722	0.87[EUR][1000 genomes]
rs1367031	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs1429840	0.82[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs17105720	0.93[ASN][1000 genomes]
rs17105756	0.90[ASN][1000 genomes]
rs2021932	0.83[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2022717	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs2022722	0.85[EUR][1000 genomes]
rs6571767	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs6571768	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs712400	0.96[CEU][hapmap]
rs712404	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7143097	0.85[EUR][1000 genomes]
rs7145237	0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs7150167	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7159402	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs8015456	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs8017518	0.85[EUR][1000 genomes]
rs848702	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs861924	0.87[JPT][hapmap]
rs861925	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs861928	0.82[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1050254	chr14:37400173-37445157	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37402400-37406800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:37402600-37406200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:37403200-37404400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:37403200-37405400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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