Variant report

Variant	rs8015508
Chromosome Location	chr14:77785199-77785200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:77783199..77786317-chr14:77922263..77925867,3	MCF-7	breast:
2	chr14:77782973..77788435-chr14:78081530..78084931,5	MCF-7	breast:
3	chr14:77783570..77786058-chr14:77925180..77927873,2	K562	blood:
4	chr14:77669395..77671250-chr14:77783516..77785944,2	MCF-7	breast:
5	chr14:77559718..77567556-chr14:77781210..77790475,16	MCF-7	breast:
6	chr14:77750609..77752387-chr14:77785082..77786796,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198894	Chromatin interaction
ENSG00000100591	Chromatin interaction
ENSG00000151445	Chromatin interaction
ENSG00000259164	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100596	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10143655	0.93[EUR][1000 genomes]
rs61442105	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153929	0.90[EUR][1000 genomes]
rs73311311	0.86[EUR][1000 genomes]
rs73311328	0.89[EUR][1000 genomes]
rs8177552	0.85[EUR][1000 genomes]
rs8177569	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902105	chr14:77764884-77801431	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv902106	chr14:77767978-77801431	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77751400-77786200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:77770800-77785800	Weak transcription	K562	blood
3	chr14:77772600-77785800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:77772600-77786400	Weak transcription	Aorta	Aorta
5	chr14:77772800-77785800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:77773800-77786800	Weak transcription	Small Intestine	intestine
7	chr14:77775800-77785600	Weak transcription	HUVEC	blood vessel
8	chr14:77775800-77786200	Weak transcription	Primary T cells from cord blood	blood
9	chr14:77776000-77786000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:77776000-77786400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:77776200-77786200	Weak transcription	Primary B cells from cord blood	blood
12	chr14:77776600-77785800	Weak transcription	Fetal Brain Male	brain
13	chr14:77777400-77785200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr14:77778000-77785800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:77778800-77785800	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:77779000-77785800	Enhancers	Brain Anterior Caudate	brain
17	chr14:77779000-77786200	Enhancers	Fetal Intestine Large	intestine
18	chr14:77779200-77785400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr14:77779200-77785800	Enhancers	Brain Angular Gyrus	brain
20	chr14:77779400-77785800	Enhancers	HMEC	breast
21	chr14:77779400-77786400	Enhancers	Fetal Muscle Leg	muscle
22	chr14:77779600-77785800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:77781200-77785600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:77781200-77785800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr14:77781200-77786000	Weak transcription	Osteobl	bone
26	chr14:77781200-77786400	Weak transcription	Esophagus	oesophagus
27	chr14:77781600-77786400	Weak transcription	Ovary	ovary
28	chr14:77781800-77785600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr14:77781800-77785800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr14:77781800-77785800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr14:77781800-77786400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:77782000-77785600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:77782000-77785600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:77782000-77785800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:77782000-77785800	Weak transcription	Right Ventricle	heart
36	chr14:77782000-77785800	Weak transcription	NHDF-Ad	bronchial
37	chr14:77782000-77785800	Weak transcription	NHEK	skin
38	chr14:77782000-77786000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:77782000-77786200	Weak transcription	NHLF	lung
40	chr14:77782000-77786400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr14:77782200-77785600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:77782200-77785600	Enhancers	Brain Hippocampus Middle	brain
43	chr14:77782200-77785800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:77782200-77785800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:77782200-77785800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:77782200-77785800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:77782400-77785400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:77782400-77785800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr14:77782400-77785800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:77782400-77785800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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