Variant report

Variant	rs8015869
Chromosome Location	chr14:37404864-37404865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37323565..37325232-chr14:37403567..37406309,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10130699	0.84[EUR][1000 genomes]
rs10136303	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs1154126	0.87[CEU][hapmap];0.81[CHB][hapmap];0.81[GIH][hapmap]
rs1156170	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11844605	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs12887020	0.95[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1367030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1429842	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1429843	0.87[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1429844	0.87[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105735	0.87[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105737	0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105755	0.87[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105763	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2022718	0.91[ASN][1000 genomes]
rs2022720	0.81[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2022721	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59381342	0.92[ASN][1000 genomes]
rs61989472	0.95[ASN][1000 genomes]
rs7141518	0.87[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7143097	0.80[MEX][hapmap]
rs7156730	0.87[CHB][hapmap];0.95[CHD][hapmap];0.92[ASN][1000 genomes]
rs7159402	0.90[LWK][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs7159633	0.87[GIH][hapmap]
rs7159710	0.82[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs7160143	0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs848697	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1050254	chr14:37400173-37445157	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37402400-37406800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:37402600-37406200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:37403200-37405400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:37404400-37405800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:37404400-37406000	Enhancers	Hela-S3	cervix
6	chr14:37404600-37405200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:37404600-37406000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:37404800-37406200	Enhancers	A549	lung

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