Variant report

Variant	rs8016072
Chromosome Location	chr14:70402722-70402723
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10139615	0.95[CHB][hapmap];0.95[CHD][hapmap]
rs1276119	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs227428	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs227432	0.90[CHB][hapmap]
rs35906492	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7142820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7148010	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158965	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159801	0.95[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs8003679	1.00[CEU][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs927414	0.88[CEU][hapmap];0.87[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8016072	SMOC1	cis	parietal	SCAN
rs8016072	FAM71D	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70395200-70404200	Weak transcription	Spleen	Spleen
2	chr14:70395600-70404400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr14:70396000-70404200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:70397400-70406400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:70398400-70409400	Enhancers	Liver	Liver
6	chr14:70398800-70403000	Weak transcription	Placenta	Placenta
7	chr14:70399400-70407200	Weak transcription	Brain Substantia Nigra	brain
8	chr14:70399600-70406400	Strong transcription	Hela-S3	cervix
9	chr14:70399600-70409600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:70400200-70404800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:70400600-70402800	Weak transcription	HepG2	liver
12	chr14:70400800-70403000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:70401200-70403000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:70402200-70402800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:70402200-70403800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:70402400-70402800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:70402400-70403400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:70402400-70403600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:70402400-70404000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
20	chr14:70402600-70403400	Enhancers	NHEK	skin

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