Variant report

Variant	rs8016151
Chromosome Location	chr14:81043827-81043828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81033414..81035767-chr14:81040796..81044689,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10135604	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10136394	0.83[EUR][1000 genomes]
rs10138431	0.90[CEU][hapmap];0.84[JPT][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs10140845	0.95[CEU][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap]
rs10145319	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10146465	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs10146659	0.82[EUR][1000 genomes]
rs10146748	0.82[EUR][1000 genomes]
rs10147245	0.83[EUR][1000 genomes]
rs10148083	0.84[JPT][hapmap];0.81[YRI][hapmap]
rs10149210	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10498544	0.84[JPT][hapmap]
rs11159469	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs12587285	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]
rs12878113	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12881248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12886241	0.84[JPT][hapmap]
rs12889844	0.85[EUR][1000 genomes]
rs17110851	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs17110854	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17110955	0.83[EUR][1000 genomes]
rs2290168	0.84[JPT][hapmap]
rs2619659	0.89[CHB][hapmap]
rs34019777	0.97[ASN][1000 genomes]
rs34481438	0.80[ASN][1000 genomes]
rs34489190	1.00[ASN][1000 genomes]
rs34946091	0.95[ASN][1000 genomes]
rs35038680	0.94[ASN][1000 genomes]
rs35426127	0.94[ASN][1000 genomes]
rs35505520	0.85[ASN][1000 genomes]
rs35930082	0.94[ASN][1000 genomes]
rs55670336	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56256007	0.82[ASN][1000 genomes]
rs61981704	0.94[ASN][1000 genomes]
rs61981706	0.88[ASN][1000 genomes]
rs67116258	0.94[ASN][1000 genomes]
rs7160604	0.80[JPT][hapmap]
rs7160749	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs8005242	0.81[EUR][1000 genomes]
rs8008043	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs8010347	0.86[CEU][hapmap];0.84[GIH][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs8017020	0.96[YRI][hapmap]
rs8017175	0.88[ASN][1000 genomes]
rs9323688	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8016151	TSC22D3	trans	parietal	SCAN
rs8016151	C14orf145	cis	parietal	SCAN
rs8016151	C14orf145	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81029600-81044800	Weak transcription	Dnd41	blood
2	chr14:81037000-81051000	Weak transcription	NHEK	skin
3	chr14:81037200-81050800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81037200-81050800	Weak transcription	HMEC	breast
5	chr14:81041400-81046200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:81042800-81048400	Weak transcription	Psoas Muscle	Psoas
7	chr14:81043000-81046400	Enhancers	HepG2	liver
8	chr14:81043000-81050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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