Variant report

Variant	rs8016257
Chromosome Location	chr14:33107920-33107921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33104661..33106240-chr14:33107373..33109760,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10139885	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10140278	0.81[CEU][hapmap]
rs10143113	0.80[CEU][hapmap]
rs11626506	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11627076	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11627566	0.82[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11627900	0.81[CEU][hapmap]
rs12147120	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12586675	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12586676	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12888621	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1956201	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956216	0.81[JPT][hapmap]
rs1956220	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2180449	0.87[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7141387	0.83[ASN][1000 genomes]
rs7152377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153041	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7154943	0.90[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7159519	0.87[EUR][1000 genomes]
rs7160301	0.81[CEU][hapmap]
rs8021432	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs983766	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33099200-33120400	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:33103200-33114600	Weak transcription	Aorta	Aorta
3	chr14:33104600-33120400	Weak transcription	HSMMtube	muscle
4	chr14:33104800-33116400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:33105000-33117000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:33105000-33117200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:33105200-33116000	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:33105200-33116400	Weak transcription	Brain Angular Gyrus	brain
9	chr14:33107000-33130600	Weak transcription	Left Ventricle	heart
10	chr14:33107600-33108600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:33107600-33109800	Weak transcription	NHDF-Ad	bronchial
12	chr14:33107800-33110000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:33107800-33113000	Weak transcription	Fetal Heart	heart

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